CCPlotR
This is the development version of CCPlotR; for the stable release version, see CCPlotR.
Plots For Visualising Cell-Cell Interactions
Bioconductor version: Development (3.21)
CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.
Author: Sarah Ennis [aut, cre] (ORCID:
Maintainer: Sarah Ennis <ennissarah94 at gmail.com>
citation("CCPlotR")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CCPlotR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CCPlotR")| User Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | CellBiology, Network, SingleCell, Software, SystemsBiology, Visualization |
| Version | 1.5.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | plyr, tidyr, dplyr, ggplot2, forcats, ggraph, igraph, scatterpie, circlize, ComplexHeatmap, tibble, grid, ggbump, stringr, ggtext, ggh4x, patchwork, RColorBrewer, scales, viridis, grDevices, graphics, stats, methods |
| System Requirements | |
| URL | https://github.com/Sarah145/CCPlotR |
| Bug Reports | https://github.com/Sarah145/CCPlotR/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CCPlotR_1.5.0.tar.gz |
| Windows Binary (x86_64) | CCPlotR_1.5.0.zip (64-bit only) |
| macOS Binary (x86_64) | CCPlotR_1.5.0.tgz |
| macOS Binary (arm64) | CCPlotR_1.5.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CCPlotR |
| Source Repository (Developer Access) | git clone [email protected]:packages/CCPlotR |
| Bioc Package Browser | https://code.bioconductor.org/browse/CCPlotR/ |
| Package Short Url | https://bioconductor.org/packages/CCPlotR/ |
| Package Downloads Report | Download Stats |