Changes in version 1.5.22 (2018-04-28):

Bug Fixes

    o   stats::cor is used in compute.pigengene and draw.cor functions. See
	 the NAMESPACE for the important reason.

Changes in version 1.5.9 (2018-03-12):

General

    o   cor is imported from WGCNA, but not from stats, because WGCNA does
	 not call the cor function properly.

Changes in existing functions

    o   RsquaredCut is added to the arguments of the one.step.pigengene
	 function.

Changes in version 1.5.6 (2018-01-19):

Changes in existing functions

    o   In the get.fitted.leaf function, the function C50:::as.party.C5.0 is
	 used, which used to be exported in the previous versions of C50,
	 but not in version 0.1.1.

Changes in version 1.5.2 (2017-11-10):

New functions

    o   The check.nas function is now exported.

Changes in version 1.3.8 (2017-09-13):

Changes in existing functions

    o   Order of conditions in pheatmap.type can now be determined by the
	 user.

Changes in version 1.3.6 (2017-08-20):

Changes in existing functions

    o   A bug in gene.mapping () function fixed to better map probe IDs.

Changes in version 1.3.4 (2017-07-31):

Changes in existing functions

    o   The doTranspose argument added to the heatmap.type() function.

Changes in version 1.1.14 (2017-05-10):

Changes in existing functions

    o   A bug in the module.heatmap() function fixed.

Changes in version 1.1.12 (2017-04-15):

Changes in existing functions

    o   The mouseHomologFilter argument is added to the unexported furntion
	 hu.mouse() with a default value of "with_mmusculus_homolog". This
	 is now compatible with biomaRt_2.30.0, it used to be
	 "with_homolog_mmus" in older versions of biomaRt.

Changes in version 1.1.10 (2017-03-30):

Changes in existing functions

    o   Checking the pigengene input of module.heatmap().

    o   Issues in the balance() function (not exported) where Labels is a
	 factor are resolved. Also, if all sampls have the same size,
	 oversampling is automatically turned off.

    o   If Labels is a factor, it is now converted to a character vector in
	 check. pigengene.input().

Changes in version 1.1.6 (2017-03-27):

Changes in existing functions

    o   The module.heatmap() function now has the doAddEigengene and
	 scalePngs arguments.

    o   The compute.pigengene() function now reports also the size of
	 modules in the pigengene_pvalue.csv output file.

Changes in version 0.99.25 (2016-10-02):

Changes in existing functions

    o   The compute.pigengene() function now uses welch.pvalue() instead of
	 pvalues.manov().

Changes in version 0.99.8 (2016-05-18):

General

    o   Under review by Bioconductor.

    o   Created.