qcmetrics
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see qcmetrics.
A Framework for Quality Control
Bioconductor version: 3.7
The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.
Author: Laurent Gatto [aut, cre]
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>
citation("qcmetrics")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qcmetrics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qcmetrics")| Index file for the qcmetrics package vignette | HTML | R Script |
| The 'qcmetrics' infrastructure for quality control and reporting | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization |
| Version | 1.18.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.3) |
| Imports | Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors |
| System Requirements | |
| URL | https://github.com/lgatto/qcmetrics |
| Bug Reports | https://github.com/lgatto/qcmetrics/issues |
See More
| Suggests | affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MSstatsQC |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | qcmetrics_1.18.0.tar.gz |
| Windows Binary | qcmetrics_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | qcmetrics_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qcmetrics |
| Source Repository (Developer Access) | git clone [email protected]:packages/qcmetrics |
| Package Short Url | https://bioconductor.org/packages/qcmetrics/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |