miRNAtap
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see miRNAtap.
miRNAtap: microRNA Targets - Aggregated Predictions
Bioconductor version: 3.7
The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).
Author: Maciej Pajak, T. Ian Simpson
Maintainer: Maciej Pajak <m.pajak at sms.ed.ac.uk>
citation("miRNAtap")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("miRNAtap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("miRNAtap")| miRNAtap | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, Microarray, Sequencing, Software, miRNA |
| Version | 1.14.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.3.0), AnnotationDbi |
| Imports | DBI, RSQLite, stringr, sqldf, plyr, methods |
| System Requirements | |
| URL |
See More
| Suggests | topGO, org.Hs.eg.db, miRNAtap.db, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | miRNAtap.db |
| Imports Me | miRNAtap.db, SpidermiR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | miRNAtap_1.14.0.tar.gz |
| Windows Binary | miRNAtap_1.14.0.zip |
| Mac OS X 10.11 (El Capitan) | miRNAtap_1.14.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/miRNAtap |
| Source Repository (Developer Access) | git clone [email protected]:packages/miRNAtap |
| Package Short Url | https://bioconductor.org/packages/miRNAtap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |