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flagme

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see flagme.

Analysis of Metabolomics GC/MS Data


Bioconductor version: 3.7

Fragment-level analysis of gas chromatography - mass spectrometry metabolomics data

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Citation (from within R, enter citation("flagme")):

Installation

To install this package, start R (version "3.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")
Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, MassSpectrometry, Software
Version 1.36.0
In Bioconductor since BioC 2.4 (R-2.9) (15 years)
License LGPL (>= 2)
Depends gcspikelite, xcms, CAMERA
Imports gplots, graphics, MASS, methods, SparseM, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flagme_1.36.0.tar.gz
Windows Binary flagme_1.36.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) flagme_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access) git clone [email protected]:packages/flagme
Package Short Url https://bioconductor.org/packages/flagme/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive