beachmat
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see beachmat.
Compiling Bioconductor to Handle Each Matrix Type
Bioconductor version: 3.7
Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.
Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]
Maintainer: Aaron Lun <alun at wehi.edu.au>
Citation (from within R, enter
citation("beachmat")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("beachmat")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("beachmat")| Linking to beachmat with C++ code from another package | HTML | R Script |
| Using beachmat to read data from R matrices in C++ | HTML | R Script |
| Using beachmat to write data into R matrix objects | HTML | R Script |
| Using beachmat's helper functions in R | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.5) |
| Imports | utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.7.3), DelayedArray(>= 0.5.30), Rcpp (>= 0.12.14) |
| System Requirements | C++11 |
| URL |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools |
| Linking To | Rcpp, Rhdf5lib |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DropletUtils, scater, scran |
| Links To Me | DropletUtils, scater, scran |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | beachmat_1.2.1.tar.gz |
| Windows Binary | beachmat_1.2.1.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | beachmat_1.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/beachmat |
| Source Repository (Developer Access) | git clone [email protected]:packages/beachmat |
| Package Short Url | https://bioconductor.org/packages/beachmat/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |