GeneBreak
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GeneBreak.
Gene Break Detection
Bioconductor version: 3.7
Recurrent breakpoint gene detection on copy number aberration profiles.
Author: Evert van den Broek, Stef van Lieshout
Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>
Citation (from within R, enter
citation("GeneBreak")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneBreak")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneBreak")| GeneBreak | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges |
| Imports | graphics, methods |
| System Requirements | |
| URL | https://github.com/stefvanlieshout/GeneBreak |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeneBreak_1.10.0.tar.gz |
| Windows Binary | GeneBreak_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | GeneBreak_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneBreak |
| Source Repository (Developer Access) | git clone [email protected]:packages/GeneBreak |
| Package Short Url | https://bioconductor.org/packages/GeneBreak/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |