CHANGES IN VERSION 1.7.9 ----------------------- NEW FEATURES o updated bowtie to version 1.1.1 (currently not using long index feature, renaming bowtie-align-s and bowtie-build-s to bowtie and bowtie-build) CHANGES IN VERSION 1.4.1 ----------------------- NEW FEATURES o updated bowtie to version 1.0.1 (patched in 1.5.2/1.5.3 to compile on OS X 10.9) CHANGES IN VERSION 1.1.1 ----------------------- NEW FEATURES o updated bowtie to version 1.0.0 CHANGES IN VERSION 1.0.0 ----------------------- INITIAL RELEASE o bowtie version 0.12.8 o SpliceMap version 3.3.5.2 modified BUG FIXES o Several bug fixes and modifications in the source code of SpliceMap for integration in Rbowtie/QuasR.