RTCGA.CNV
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see RTCGA.CNV.
CNV (Copy-number variation) datasets from The Cancer Genome Atlas Project
Bioconductor version: 3.18
Package provides CNV (based on Merge snp) datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Data format is explained here https://wiki.nci.nih.gov/display/TCGA/Retrieving +Data+Using+the+Data+Matrix. Data from 2015-11-01 snapshot.
Author: Przemyslaw Biecek <przemyslaw.biecek at gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>
citation("RTCGA.CNV")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTCGA.CNV")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTCGA.CNV")
Using RTCGA to download CNV data as included in RTCGA.CNV | HTML | R Script |
Using RTCGA to estimate ratio of MDM2 duplications | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | AnnotationData, ExperimentData |
Version | 1.30.0 |
License | GPL-2 |
Depends | R (>= 3.3.0), RTCGA |
Imports | |
System Requirements | |
URL | |
Bug Reports | https://github.com/RTCGA/RTCGA/issues |
See More
Suggests | knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | RTCGA |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | RTCGA.CNV_1.30.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/RTCGA.CNV |
Source Repository (Developer Access) | git clone [email protected]:packages/RTCGA.CNV |
Package Short Url | https://bioconductor.org/packages/RTCGA.CNV/ |
Package Downloads Report | Download Stats |