NTW
Predict gene network using an Ordinary Differential Equation (ODE) based method
Bioconductor version: 2.7
This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.
Author: Wei Xiao, Yin Jin, Darong Lai, Xinyi Yang, Yuanhua Liu, Christine Nardini
Maintainer: Yuanhua Liu <liuyuanhua at picb.ac.cn>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("NTW")
To cite this package in a publication, start R and enter:
citation("NTW")
Documentation
| R Script | NTW vignette | |
| Reference Manual |
Details
| biocViews | Preprocessing, Statistics |
| Depends | R (>= 2.3.0) |
| Imports | mvtnorm, stats, utils |
| Suggests | |
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.7 (R-2.12) |
Package Downloads
| Package Source | NTW_1.0.0.tar.gz |
| Windows Binary | NTW_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | NTW_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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