snpMatrix

The snp.matrix and X.snp.matrix classes

Bioconductor version: 2.6

Implements classes and methods for large-scale SNP association studies

Author: David Clayton <david.clayton at cimr.cam.ac.uk> and Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: David Clayton <david.clayton at cimr.cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snpMatrix")

To cite this package in a publication, start R and enter:

    citation("snpMatrix")

PDF	R Script	Imputation and meta-analysis
PDF	R Script	Principal components analysis
PDF		Rill
PDF	R Script	snpMatrix introduction
PDF		snpMatrix-paper-HumanHeridity2007.pdf
PDF	R Script	TDT tests
PDF		Reference Manual

biocViews	Microarray, SNP, GeneticVariability
Depends	R(>= 2.3.0), survival, methods
Imports	graphics, grDevices, methods, stats, survival, utils
Suggests	hexbin
System Requirements
License	GPL-3
URL	http://www-gene.cimr.cam.ac.uk/clayton/software/
Depends On Me	encoDnaseI, GGdata
Imports Me
Suggests Me	crlmm, ind1KG
Version	1.12.0
Since	Bioconductor 2.2 (R-2.7)

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!