ShortRead

Base classes and methods for high-throughput short-read sequencing data.

Bioconductor version: 2.6

Base classes, functions, and methods for representation of high-throughput, short-read sequencing data.

Author: Martin Morgan, Michael Lawrence, Simon Anders

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ShortRead")

To cite this package in a publication, start R and enter:

    citation("ShortRead")

PDF	R Script	An introduction to ShortRead
PDF		ShortRead_and_HilbertVis.pdf
PDF		Reference Manual

biocViews	DataImport, Sequencing, HighThroughputSequencing, QualityControl
Depends	methods, IRanges(>= 1.5.65), GenomicRanges, Biostrings(>= 2.13.52), lattice, Rsamtools
Imports	IRanges, GenomicRanges, Biostrings, Biobase, hwriter, Rsamtools
Suggests	biomaRt
System Requirements
License	Artistic-2.0
URL
Depends On Me	chipseq, ChIPseqR, DEGseq, EatonEtAlChIPseq, girafe, Rolexa, segmentSeq
Imports Me	chipseq, ChIPseqR, ChIPsim, Rolexa
Suggests Me	Genominator, PICS, Rsamtools, yeastRNASeq
Version	1.6.2
Since	Bioconductor 2.3 (R-2.8)

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