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CGHbase
CGHbase: Base functions and classes for arrayCGH data analysis.
Bioconductor version: 2.6
Contains functions and classes that are needed by arrayCGH packages.
Author: Sjoerd Vosse
Maintainer: Sjoerd Vosse <info at vossewebdevelopment.nl>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CGHbase")
To cite this package in a publication, start R and enter:
citation("CGHbase")
Documentation
| Reference Manual |
Details
| biocViews | Infrastructure, Microarray, CopyNumberVariants |
| Depends | R (>= 2.4.0), methods, Biobase(>= 2.5.5), marray |
| Imports | |
| Suggests | |
| System Requirements | |
| License | GPL |
| URL | |
| Depends On Me | CGHcall, CGHnormaliter, CGHregions |
| Imports Me | CGHnormaliter |
| Suggests Me | |
| Version | 1.6.0 |
| Since | Bioconductor 2.3 (R-2.8) |
Package Downloads
| Package Source | CGHbase_1.6.0.tar.gz |
| Windows Binary | CGHbase_1.6.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | CGHbase_1.6.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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