| Package | Maintainer | Title |
|---|---|---|
| clippda | Stephen Nyangoma | A package for the clinical proteomic profiling data analysis |
| LPEadj | Carl Murie | A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size. |
| MassSpecWavelet | Pan Du | Mass spectrum processing by wavelet-based algorithms |
| PAnnBuilder | Li Hong | Protein annotation data package builder |
| PCpheno | Nolwenn Le Meur | Phenotypes and cellular organizational units |
| plgem | Norman Pavelka | Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM) |
| PLPE | Soo-heang Eo | Local Pooled Error Test for Differential Expression with Paired High-throughput Data |
| ppiStats | Tony Chiang | Protein-Protein Interaction Statistical Package |
| PROcess | Xiaochun Li | Ciphergen SELDI-TOF Processing |
| RpsiXML | Jitao David Zhang | R interface to PSI-MI 2.5 files |
| ScISI | Tony Chiang | In Silico Interactome |
| SLGI | Nolwenn Le Meur | Synthetic Lethal Genetic Interaction |