| Package | Maintainer | Title |
|---|---|---|
| affydata | Laurent | Affymetrix Data for Demonstration Purpose |
| AffymetrixDataTestFiles | Henrik Bengtsson | Affymetrix data files (CEL, CDF, CHP, EXP, PSI) for testing |
| ALL | Xiaochun Li | A data package |
| ALLMLL | B. M. Bolstad | A subset of arrays from a large acute lymphoblastic leukemia (ALL) study |
| AmpAffyExample | Rafael A. Irizarry | Example of Amplified Data |
| beta7 | Jean Yang | Rodriguez et al. (2004) Differential Gene Expression by Memory/Effector T Helper Cells Bearing the Gut-Homing Receptor Integrin alpha4 beta7. |
| bronchialIL13 | Vince Carey | time course experiment involving il13 |
| CCl4 | Audrey Kauffmann | Carbon Tetrachloride (CCl4) treated hepatocytes |
| ccTutorial | Joern Toedling | Data package for ChIP-chip tutorial |
| CLL | Robert Gentleman | A Package for CLL Gene Expression Data |
| colonCA | W Sylvia Merk | exprSet for Alon et al. (1999) colon cancer data |
| davidTiling | Wolfgang Huber | Data and analysis scripts for David, Huber et al. yeast tiling array paper |
| dyebiasexamples | Philip Lijnzaad | Example data for the dyebias package, which implements the GASSCO method. |
| ecoliLeucine | Laurent Gautier | Experimental data with Affymetrix E. coli chips |
| encoDnaseI | VJ Carey | data provided by UCSC for Cd4 raw measures of DnaseI hypersensitivity |
| estrogen | R. Gentleman | 2x2 factorial design exercise for the Bioconductor short course |
| faahKO | Colin A. Smith | Saghatelian et al. (2004) FAAH knockout LC/MS data |
| facsDorit | Florian Hahne | DKFZ FACS example data |
| fibroEset | Sylvia Merk | exprSet for Karaman et al. (2003) fibroblasts data |
| gaschYHS | Vince Carey | ExpressionSet for response of yeast to heat shock and other environmental stresses |
| gatingMLData | Nishant Gopalakrishnan | Data and XML files for GatingML Test suite |
| gcspikelite | Mark Robinson | Spike-in data for GC/MS data and methods within flagme |
| GenomicFeatures | Deepayan Sarkar | A transient package to store various Genomic Features |
| GGdata | VJ Carey | all 90 hapmap CEU samples, 47K expression, 4mm SNP |
| golubEsets | Vince Carey | exprSets for golub leukemia data |
| hapmap100khind | Benilton Carvalho | Sample data - Hapmap 100K HIND Affymetrix |
| hapmap100kxba | Benilton Carvalho | Sample data - Hapmap 100K XBA Affymetrix |
| hapmap500knsp | Benilton Carvalho | Sample data - Hapmap 500K NSP Affymetrix |
| hapmap500ksty | Benilton Carvalho | Sample data - Hapmap 500K STY Affymetrix |
| hapmapsnp5 | Benilton Carvalho | Sample data - Hapmap SNP 5.0 Affymetrix |
| hapmapsnp6 | Benilton Carvalho | Sample data - Hapmap SNP 5.0 Affymetrix |
| harbChIP | VJ Carey | Experimental Data Package: harbChIP |
| HEEBOdata | Agnes Paquet | HEEBO set and HEEBO controls. |
| HIVcDNAvantWout03 | Chris Fraley | T cell line infections with HIV-1 LAI (BRU) |
| hmyriB36 | Vincent Carey | YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes |
| humanStemCell | R. Gentleman | Human Stem Cells time course experiment |
| ind1KG | VJ Carey | Data from 1000 Genomes, NA19240 (female) chr6 excerpt |
| ITALICSData | Guillem Rigaill | ITALICSData |
| Iyer517 | Vince Carey | exprSets for Iyer, Eisen et all 1999 Science paper |
| kidpack | Wolfgang Huber | DKFZ kidney package |
| lumiBarnes | Pan Du | Barnes Benchmark Illumina Tissues Titration Data |
| lungExpression | Robert Scharpf | ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paper |
| maqcExpression4plex | Benilton Carvalho | Sample Expression Data - MAQC / HG18 - NimbleGen |
| MAQCsubset | VJ Carey | Experimental Data Package: MAQCsubset |
| MAQCsubsetAFX | Laurent Gatto | MAQC data subset for the Affymetrix platform |
| MAQCsubsetILM | Laurent Gatto | MAQC data subset for the Illumina platform |
| MEEBOdata | Agnes Paquet | MEEBO set and MEEBO controls. |
| msdata | Steffen Neumann | Various Mass Spectrometry raw data example files |
| mvoutData | VJ Carey | affy and illumina raw data for assessing outlier detector performance |
| Neve2006 | VJ Carey | expression and CGH data on breast cancer cell lines |
| ppiData | Tony Chiang | A package that contains the bait to prey directed graphs for protein-protein interactions. |
| ProData | Xiaochun Li | SELDI-TOF data of Breast cancer samples |
| pumadata | Richard Pearson | Various data sets for use with the puma package |
| rfcdmin | N. Le Meur | Minimal Data Library for RFlowCyt examples |
| SNAData | Denise Scholtens | Social Networks Analysis Data Examples |
| SpikeIn | Rafael A. Irizarry | Affymetrix Spike-In Experiment Data |
| SpikeInSubset | Rafael A. Irizarry | Part of Affymetrix's Spike-In Experiment Data |
| stjudem | Joern Toedling | Microarray Data from Yeoh et al. in MACAT format |
| TargetSearchData | Alvaro Cuadros-Inostroza Henning Redestig , Matt Hannah | Example GC-MS data for TargetSearch Package |
| XhybCasneuf | Tineke Casneuf | EBI/PSB cross-hybridisation study package |
| yeastCC | Sandrine Dudoit | Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data |
| yeastExpData | R. Gentleman | Yeast Experimental Data |
| yeastGSData | R. Gentleman | Yeast Gold Standard Data |
| yeastRNASeq | J. Bullard | Yeast RNA-Seq Experimental Data from Lee et al. 2008 |