gaga

GaGa hierarchical model for microarray data analysis

This package fits Rossell's generalizations of the Gamma-Gamma hierarchical model for microarray data analysis, which substantially improve the quality of the fit at a low computational cost. The model can be fit via empirical Bayes (Expectation-Maximization and Simulated Annealing) and fully Bayesian techniques (Gibbs and Metropolis-Hastings posterior sampling). Routines are provided to perform differential expression analysis and class prediction.

Author David Rossell .
Maintainer David Rossell

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("gaga")

Documentation

Manual for the gaga library PDF R Script
Reference Manual

Details

biocViews
Depends
R , Biobase , coda
Imports
Suggests
System Requirements
License GPL (>=2)
URL
Depends On Me
Imports Me
Suggests Me
Development History Bioconductor Changelog

Package Downloads

Package source gaga_1.4.0.tar.gz
Windows binary gaga_1.4.0.zip
MacOS X 10.4 (Tiger) binary gaga_1.4.0.tgz
MacOS X 10.5 (Leopard) binary gaga_1.4.0.tgz
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