This package defines classes and functions for plotting copy number and genotype in high throughput SNP platforms such as Affymetrix and Illumina. In particular, SNPchip is a useful add-on to the oligo package for visualizing SNP-level estimates after pre-processing.
| Author | Robert Scharpf and Ingo Ruczinski |
| Maintainer | Robert Scharpf |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("SNPchip")
| oligoHowTo Vignette | R Script | |
|---|---|---|
| SNPchip Vignette | R Script | |
| Reference Manual |
| biocViews | |
|---|---|
| Depends |
R
,
Biobase
,
methods
,
oligoClasses
,
graphics
|
| Imports | |
| Suggests |
RSQLite
,
geneplotter
,
stats
,
graphics
,
VanillaICE
,
RColorBrewer
|
| System Requirements | |
| License | LGPL version 2 or newer |
| URL | http://www.biostat.jhsph.edu/~iruczins/software/snpchip.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Development History | Bioconductor Changelog |
| Package source | SNPchip_1.8.0.tar.gz |
|---|---|
| Windows binary | SNPchip_1.8.0.zip |
| MacOS X 10.4 (Tiger) binary | SNPchip_1.8.0.tgz |
| MacOS X 10.5 (Leopard) binary | SNPchip_1.8.0.tgz |
| Package Downloads Report | Downloads Stats |