snapCGH

Segmentation, normalisation and processing of aCGH data.

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author Mike L. Smith, John C. Marioni, Steven McKinney, Tom J. Hardcastle, Natalie P. Thorne
Maintainer John Marioni

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snapCGH")

Vignettes (Documentation)

Package Downloads

snapCGHguide.pdf
Source snapCGH_1.8.0.tar.gz
Windows binary snapCGH_1.8.0.zip
OS X binary snapCGH_1.8.0.tgz

Details

biocViews
Depends limma, tilingArray, DNAcopy, GLAD, cluster, methods, aCGH
Suggests
Imports
SystemRequirements
License GPL
URL
dependsOnMe
suggestsMe beadarraySNP