panp
Presence-Absence Calls from Negative Strand Matching Probesets
A function to make gene presence/absence calls based on
distance from negative strand matching probesets (NSMP) which
are derived from Affymetrix annotation. PANP is applied after
gene expression values are created, and therefore can be used
after any preprocessing method such as MAS5 or GCRMA, or
PM-only methods like RMA. NSMP sets have been established for
the HGU133A and HGU133-Plus-2.0 chipsets to date.
| Author |
Peter Warren |
| Maintainer |
Peter Warren |
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("panp")
Vignettes (Documentation)
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Package Downloads
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Details
| biocViews |
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| Depends |
affy, R, Biobase |
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| License |
GPL version 2 or newer |
| URL |
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