globaltest

Testing Association of Groups of Genes with a Clinical Variable

Testing whether sets of genes (e.g. KEGG pathways of GO terms) are significantly associated with a clinical variable of interest.

Author Jelle Goeman and Jan Oosting
Maintainer Jelle Goeman

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("globaltest")

Vignettes (Documentation)

Package Downloads
GlobalTest.pdf
Source globaltest_4.10.0.tar.gz
Windows binary globaltest_4.10.0.zip
OS X binary globaltest_4.10.0.tgz

Details

biocViews
Microarray , OneChannel , Statistics , DifferentialExpression , GO , Pathways
Depends methods, graphics, multtest, AnnotationDbi, annotate
Suggests vsn, golubEsets, KEGG.db, hu6800.db, GOstats, Rgraphviz, GO.db
Imports Biobase, survival, AnnotationDbi, annotate
SystemRequirements
License GPL version 2 or newer
URL http://www.msbi.nl/goeman
dependsOnMe GlobalAncova
suggestsMe