VanillaICE

Methods for fitting Hidden Markov Models to SNP chip data

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author Robert Scharpf and Ingo Ruczinski
Maintainer Robert Scharpf

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("VanillaICE")

Vignettes (Documentation)

Package Downloads
IlluminaHowTo.pdf
VanillaICE.pdf
Source VanillaICE_1.2.0.tar.gz
Windows binary VanillaICE_1.2.0.zip
OS X binary VanillaICE_1.2.0.tgz

Details

biocViews
Statistics , DNACopyNumber , SNPsAndGeneticVariability , Visualization
Depends R, SNPchip, oligoClasses, Biobase
Suggests RColorBrewer, genefilter, RSQLite
Imports
SystemRequirements
License LGPL-2
URL http://www.biostat.jhsph.edu/~rscharpf/software/index.html
dependsOnMe
suggestsMe SNPchip