############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings frmaExampleData_1.43.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/frmaExampleData.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘frmaExampleData/DESCRIPTION’ ... OK * this is package ‘frmaExampleData’ version ‘1.43.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘frmaExampleData’ can be installed ... OK * checking installed package size ... INFO installed size is 16.6Mb sub-directories of 1Mb or more: data 16.5Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... WARNING Failed with error: 'there is no package called 'affy'' Error loading dataset 'AffyBatch133a': Error in .requirePackage(package) : unable to load required package 'affy' Failed with error: 'there is no package called 'affy'' Error loading dataset 'AffyBatch133atag': Error in .requirePackage(package) : unable to load required package 'affy' Failed with error: 'there is no package called 'affy'' Error loading dataset 'AffyBatch133plus2': Error in .requirePackage(package) : unable to load required package 'affy' Failed with error: 'there is no package called 'affy'' Error loading dataset 'AffyBatchExample': Error in .requirePackage(package) : unable to load required package 'affy' The dataset(s) may use package(s) not declared in Depends/Imports. * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress AffyBatch133a.rda 10.8Mb 6.9Mb xz AffyBatch133atag.rda 2.2Mb 891Kb xz AffyBatch133plus2.rda 5.4Mb 1.9Mb xz AffyBatchExample.rda 4.3Mb 2.3Mb xz * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE See ‘/home/biocbuild/bbs-3.21-data-experiment/meat/frmaExampleData.Rcheck/00check.log’ for details.