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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:brgedata.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings brgedata_1.29.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/brgedata.Rcheck’
* using R Under development (unstable) (2024-10-21 r87258)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘brgedata/DESCRIPTION’ ... OK
* this is package ‘brgedata’ version ‘1.29.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘brgedata’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 489.5Mb
  sub-directories of 1Mb or more:
    data     183.3Mb
    extdata  306.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Warning: found non-ASCII strings
  'Average Brominated THM uptake (<b5>g/day)' in object 'brge_expo'
  'Average Chloroform uptake (<b5>g/day)' in object 'brge_expo'
  'Average total THM uptake (<b5>g/day)' in object 'brge_expo'
  'Benzene levels (<b5>g/m3)' in object 'brge_expo'
  'BPA (<b5>g/g creatine)' in object 'brge_expo'
  'Mercury (<b5>g/l)' in object 'brge_expo'
  'NO2 levels (<b5>g/m3)' in object 'brge_expo'
  'PFBS (<b5>g/l)' in object 'brge_expo'
  'PFHxS (<b5>g/l)' in object 'brge_expo'
  'PFOA (<b5>g/l)' in object 'brge_expo'
  '<b5>g/l' in object 'brge_expo'
* checking LazyData ... WARNING
  LazyData DB of 183.4 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
brge_methy 10.906  0.826  11.735
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/brgedata.Rcheck/00check.log’
for details.

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###
### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL brgedata
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘brgedata’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (brgedata)