############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL seqTools ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘seqTools’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)’ gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c seqTools.c -o seqTools.o seqTools.c: In function ‘count_genome_Kmers’: seqTools.c:851:93: warning: format ‘%u’ expects a matching ‘unsigned int’ argument [-Wformat=] 851 | error("[count_genome_Kmers] character mismatch at position %u!"); | ~^ | | | unsigned int seqTools.c: In function ‘scale_kmer_matrix’: seqTools.c:3296:55: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘double’ [-Wformat=] 3296 | error("[scale_kmer_matrix] scale[%i]=%i must be >1!", column_index, scale); | ~^ ~~~~~ | | | | int double | %f seqTools.c:3306:73: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘double’ [-Wformat=] 3306 | error("[scale_kmer_matrix] scale[%i] = %i must be >1!", column_index, scale); | ~^ ~~~~~ | | | | int double | %f gcc -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o seqTools.so seqTools.o -lm -lz -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-seqTools/00new/seqTools/libs ** R ** inst ** byte-compile and prepare package for lazy loading Warning message: In fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning in fun(libname, pkgname) : Package 'zlibbioc' is deprecated and will be removed from Bioconductor version 3.22 ** testing if installed package keeps a record of temporary installation path * DONE (seqTools)