############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pvac ### ############################################################################## ############################################################################## * checking for file ‘pvac/DESCRIPTION’ ... OK * preparing ‘pvac’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘pvac.Rnw’ using Sweave Loading required package: BiocGenerics Loading required package: generics Attaching package: ‘generics’ The following objects are masked from ‘package:base’: as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Error: processing vignette 'pvac.Rnw' failed with diagnostics: chunk 6 (label = example) Error : package or namespace load failed for ‘hgu133acdf’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RSQLite/libs/RSQLite.so': /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RSQLite/libs/RSQLite.so) --- failed re-building ‘pvac.Rnw’ SUMMARY: processing the following file failed: ‘pvac.Rnw’ Error: Vignette re-building failed. Execution halted