############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:oligoClasses.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings oligoClasses_1.69.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/oligoClasses.Rcheck’ * using R Under development (unstable) (2024-11-20 r87352) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘oligoClasses/DESCRIPTION’ ... OK * this is package ‘oligoClasses’ version ‘1.69.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' ERROR Packages suggested but not available: 'pd.genomewidesnp.6', 'pd.genomewidesnp.5', 'pd.mapping50k.hind240', 'pd.mapping50k.xba240', 'pd.mapping250k.sty', 'pd.mapping250k.nsp', 'VanillaICE', 'crlmm' Packages which this enhances but not available for checking: 'doMPI', 'doRedis' The suggested packages are required for a complete check. Checking can be attempted without them by setting the environment variable _R_CHECK_FORCE_SUGGESTS_ to a false value. See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. * DONE Status: 1 ERROR See ‘/Users/biocbuild/bbs-3.21-bioc/meat/oligoClasses.Rcheck/00check.log’ for details.