############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL oligo ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘oligo’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c DABG.c -o DABG.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/preprocessCore/include' -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c ParserGzXYS.c -o ParserGzXYS.o ParserGzXYS.c: In function ‘gzxys_header_field’: ParserGzXYS.c:62:11: warning: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 62 | final = Calloc(strlen(result)+1, char); | ^~~~~~ | calloc ParserGzXYS.c:62:36: error: expected expression before ‘char’ 62 | final = Calloc(strlen(result)+1, char); | ^~~~ ParserGzXYS.c: In function ‘R_read_gzxys_files’: ParserGzXYS.c:147:9: warning: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration] 147 | Free(d0); | ^~~~ | free make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:195: ParserGzXYS.o] Error 1 ERROR: compilation failed for package ‘oligo’ * removing ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/oligo’ * restoring previous ‘/home/biocbuild/bbs-3.21-bioc/R/site-library/oligo’