############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r miloR -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data miloR ### ############################################################################## ############################################################################## * checking for file 'miloR/DESCRIPTION' ... OK * preparing 'miloR': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'milo_contrasts.Rmd' using rmarkdown --- finished re-building 'milo_contrasts.Rmd' --- re-building 'milo_demo.Rmd' using rmarkdown --- finished re-building 'milo_demo.Rmd' --- re-building 'milo_gastrulation.Rmd' using rmarkdown Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from lines 265-272 [unnamed-chunk-22] (milo_gastrulation.Rmd) Error: processing vignette 'milo_gastrulation.Rmd' failed with diagnostics: contrasts can be applied only to factors with 2 or more levels --- failed re-building 'milo_gastrulation.Rmd' --- re-building 'milo_glmm.Rmd' using rmarkdown Warning: call dbDisconnect() when finished working with a connection --- finished re-building 'milo_glmm.Rmd' SUMMARY: processing the following file failed: 'milo_gastrulation.Rmd' Error: Vignette re-building failed. Execution halted