##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf geneRxCluster.buildbin-libdir && mkdir geneRxCluster.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh geneRxCluster_1.43.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R geneRxCluster.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=geneRxCluster.buildbin-libdir geneRxCluster_1.43.0.tar.gz'
>>>>>>> 

* installing *source* package ‘geneRxCluster’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c cluster.c -o cluster.o
cluster.c:83:5: warning: add explicit braces to avoid dangling else [-Wdangling-else]
    else if (*pvj==HITAIL)
    ^
1 warning generated.
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o geneRxCluster.so cluster.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.21-bioc/meat/geneRxCluster.buildbin-libdir/00LOCK-geneRxCluster/00new/geneRxCluster/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneRxCluster)


>>>>>>> 
>>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR geneRxCluster.buildbin-libdir/geneRxCluster/libs/geneRxCluster.so
>>>>>>> 

>>>>>>> Paths before fix:
geneRxCluster.buildbin-libdir/geneRxCluster/libs/geneRxCluster.so:
	geneRxCluster.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.0)
	/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)

>>>>>>> Fix with install_name_tool:
install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libgcc_s.1.1.dylib" "geneRxCluster.buildbin-libdir/geneRxCluster/libs/geneRxCluster.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libgfortran.5.dylib" "geneRxCluster.buildbin-libdir/geneRxCluster/libs/geneRxCluster.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libquadmath.0.dylib" "geneRxCluster.buildbin-libdir/geneRxCluster/libs/geneRxCluster.so"

>>>>>>> Paths after fix:
geneRxCluster.buildbin-libdir/geneRxCluster/libs/geneRxCluster.so:
	geneRxCluster.so (compatibility version 0.0.0, current version 0.0.0)
	/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/lib/libR.dylib (compatibility version 4.5.0, current version 4.5.0)
	/System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)