############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL MatrixRider ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'MatrixRider' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/XVector/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/Biostrings/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Biostring_stubs.c -o Biostring_stubs.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/XVector/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/Biostrings/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CuTest.c -o CuTest.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/XVector/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/Biostrings/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_MatrixRider.c -o R_init_MatrixRider.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/XVector/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/Biostrings/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RunCuTest.c -o RunCuTest.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/XVector/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/Biostrings/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c XVector_stubs.c -o XVector_stubs.o gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/IRanges/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/XVector/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/Biostrings/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/S4Vectors/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c matrix_rider.c -o matrix_rider.o gcc -shared -s -static-libgcc -o MatrixRider.dll tmp.def Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-MatrixRider/00new/MatrixRider/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'Biostrings' for request: 'pattern' when loading 'TFBSTools' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'Biostrings' for request: 'pattern' when loading 'TFBSTools' ** testing if installed package can be loaded from final location No methods found in package 'Biostrings' for request: 'pattern' when loading 'TFBSTools' ** testing if installed package keeps a record of temporary installation path * DONE (MatrixRider)