############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MatrixRider ### ############################################################################## ############################################################################## * checking for file ‘MatrixRider/DESCRIPTION’ ... OK * preparing ‘MatrixRider’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘MatrixRider’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)’ gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c Biostring_stubs.c -o Biostring_stubs.o gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c CuTest.c -o CuTest.o gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c R_init_MatrixRider.c -o R_init_MatrixRider.o gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c RunCuTest.c -o RunCuTest.o gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c XVector_stubs.c -o XVector_stubs.o gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/XVector/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c matrix_rider.c -o matrix_rider.o gcc -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o MatrixRider.so Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/tmp/RtmpiT768G/Rinst1c26d827d3336c/00LOCK-MatrixRider/00new/MatrixRider/libs ** R ** inst ** byte-compile and prepare package for lazy loading Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RSQLite/libs/RSQLite.so': /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/RSQLite/libs/RSQLite.so) Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted ERROR: lazy loading failed for package ‘MatrixRider’ * removing ‘/home/biocbuild/tmp/RtmpiT768G/Rinst1c26d827d3336c/MatrixRider’ ----------------------------------- ERROR: package installation failed