############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MEDME ### ############################################################################## ############################################################################## * checking for file ‘MEDME/DESCRIPTION’ ... OK * preparing ‘MEDME’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MEDME.rnw’ using Sweave Attaching package: ‘MEDME’ The following object is masked from ‘package:stats’: smooth Loading required package: BSgenome Loading required package: BiocGenerics Loading required package: generics Attaching package: ‘generics’ The following objects are masked from ‘package:base’: as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: ‘BiocGenerics’ The following object is masked from ‘package:MEDME’: pos The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min Loading required package: S4Vectors Loading required package: stats4 Attaching package: ‘S4Vectors’ The following object is masked from ‘package:utils’: findMatches The following objects are masked from ‘package:base’: I, expand.grid, unname Loading required package: IRanges Loading required package: GenomeInfoDb Loading required package: GenomicRanges Loading required package: Biostrings Loading required package: XVector Attaching package: ‘Biostrings’ The following object is masked from ‘package:base’: strsplit Loading required package: BiocIO Loading required package: rtracklayer Error: package or namespace load failed for ‘rtracklayer’: .onLoad failed in loadNamespace() for 'XML', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/XML/libs/XML.so': libicui18n.so.75: cannot open shared object file: No such file or directory Error: processing vignette 'MEDME.rnw' failed with diagnostics: chunk 4 (label = MEDMEcpg) Error : package ‘rtracklayer’ could not be loaded --- failed re-building ‘MEDME.rnw’ SUMMARY: processing the following file failed: ‘MEDME.rnw’ Error: Vignette re-building failed. Execution halted