############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data Harman ### ############################################################################## ############################################################################## * checking for file ‘Harman/DESCRIPTION’ ... OK * preparing ‘Harman’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘Harman’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I'/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/include' -I/usr/local/include `/home/biocbuild/R/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -I. -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c Harman.cpp -o Harman.o Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so': /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so) Calls: loadNamespace -> library.dynam -> dyn.load Execution halted Harman.cpp: In function ‘SEXPREC* HarmanMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: Harman.cpp:3008:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 3008 | else | ^~~~ Harman.cpp:3022:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 3022 | std::vector tr_std_tmp = Rcpp::as >(tr) ; | ^~~ In file included from Harman.cpp:182: CSelectRandom.h: In instantiation of ‘std::vector* CSelectRandom::ReturnVectOf32bitIntegersInRange_CSTDLIB(size_t, size_t, size_t, size_t) [with T = double; size_t = long unsigned int]’: Harman.cpp:1764:117: required from here CSelectRandom.h:943:20: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 943 | while (currval < howManyIN) | ~~~~~~~~^~~~~~~~~~~ Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so': /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so) Calls: loadNamespace -> library.dynam -> dyn.load Execution halted g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o Harman.so Harman.o -L/home/biocbuild/R/R/lib -lR Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so': /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so) Calls: loadNamespace -> library.dynam -> dyn.load Execution halted installing to /home/biocbuild/tmp/Rtmp9yCAu8/Rinst10b46b21edeb09/00LOCK-Harman/00new/Harman/libs ** R ** inst ** byte-compile and prepare package for lazy loading Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so': /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.32' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/Rcpp/libs/Rcpp.so) Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted ERROR: lazy loading failed for package ‘Harman’ * removing ‘/home/biocbuild/tmp/Rtmp9yCAu8/Rinst10b46b21edeb09/Harman’ ----------------------------------- ERROR: package installation failed