############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL GrafGen ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library’ * installing *source* package ‘GrafGen’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)’ using C++ compiler: ‘g++ (GCC) 10.3.1’ g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c AncestrySnps.cpp -o AncestrySnps.o g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c BedFileSnpGeno.cpp -o BedFileSnpGeno.o g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c BimFileAncestrySnps.cpp -o BimFileAncestrySnps.o g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c FamFileSamples.cpp -o FamFileSamples.o gcc -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c GrafGenHp_init.c -o GrafGenHp_init.o g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c GrafPop.cpp -o GrafPop.o g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c SampleGenoAncestry.cpp -o SampleGenoAncestry.o g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c SampleGenoDist.cpp -o SampleGenoDist.o g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c Util.cpp -o Util.o g++ -std=gnu++17 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -DR_NO_REMAP -c VcfSampleAncestrySnpGeno.cpp -o VcfSampleAncestrySnpGeno.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o GrafGen.so AncestrySnps.o BedFileSnpGeno.o BimFileAncestrySnps.o FamFileSamples.o GrafGenHp_init.o GrafPop.o SampleGenoAncestry.o SampleGenoDist.o Util.o VcfSampleAncestrySnpGeno.o -L/home/biocbuild/R/R/lib -lR installing to /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/00LOCK-GrafGen/00new/GrafGen/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/dplyr/libs/dplyr.so': /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/dplyr/libs/dplyr.so) Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted ERROR: lazy loading failed for package ‘GrafGen’ * removing ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/GrafGen’ * restoring previous ‘/home/biocbuild/R/R-4.5.0-devel_2024-11-24/site-library/GrafGen’