Package: brgedata

Version: 1.6.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:brgedata.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings brgedata_1.6.0.tar.gz

StartedAt: 2019-10-17 12:53:18 -0400 (Thu, 17 Oct 2019)

EndedAt: 2019-10-17 12:56:34 -0400 (Thu, 17 Oct 2019)

EllapsedTime: 195.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: brgedata.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:brgedata.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings brgedata_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/brgedata.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘brgedata/DESCRIPTION’ ... OK
* this is package ‘brgedata’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘brgedata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 638.3Mb
  sub-directories of 1Mb or more:
    data     184.2Mb
    extdata  454.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... WARNING
  Warning: found non-ASCII strings
  'Average Brominated THM uptake (g/day)' in object 'brge_expo'
  'Average Chloroform uptake (g/day)' in object 'brge_expo'
  'Average total THM uptake (g/day)' in object 'brge_expo'
  'Benzene levels (g/m3)' in object 'brge_expo'
  'BPA (g/g creatine)' in object 'brge_expo'
  'Mercury (g/l)' in object 'brge_expo'
  'NO2 levels (g/m3)' in object 'brge_expo'
  'PFBS (g/l)' in object 'brge_expo'
  'PFHxS (g/l)' in object 'brge_expo'
  'PFOA (g/l)' in object 'brge_expo'
  'g/l' in object 'brge_expo'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
brge_methy 11.288  0.739  12.026
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.9-data-experiment/meat/brgedata.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL brgedata
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘brgedata’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (brgedata)

name	user	system	elapsed
brge_gexp	1.641	0.088	1.729
brge_methy	11.288	0.739	12.026
brge_prot	0.003	0.000	0.003