Package: HDCytoData

Version: 1.4.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:HDCytoData.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings HDCytoData_1.4.0.tar.gz

StartedAt: 2019-10-17 13:18:54 -0400 (Thu, 17 Oct 2019)

EndedAt: 2019-10-17 13:22:26 -0400 (Thu, 17 Oct 2019)

EllapsedTime: 211.4 seconds

RetCode: 0

Status:  OK

CheckDir: HDCytoData.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:HDCytoData.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings HDCytoData_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/HDCytoData.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HDCytoData/DESCRIPTION’ ... OK
* this is package ‘HDCytoData’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HDCytoData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
Samusik_all_SE        10.724  0.380  11.797
Bodenmiller_BCR_XL_SE  6.007  0.216   6.556
Levine_32dim_SE        5.443  0.153   5.955
Mosmann_rare_SE        5.167  0.144   6.063
Krieg_Anti_PD_1_SE     4.640  0.105   5.167
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL HDCytoData
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘HDCytoData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2019-04-29
** testing if installed package can be loaded from final location
snapshotDate(): 2019-04-29
** testing if installed package keeps a record of temporary installation path
* DONE (HDCytoData)

name	user	system	elapsed
Bodenmiller_BCR_XL_SE	6.007	0.216	6.556
Krieg_Anti_PD_1_SE	4.640	0.105	5.167
Levine_13dim_SE	3.821	0.059	4.373
Levine_32dim_SE	5.443	0.153	5.955
Mosmann_rare_SE	5.167	0.144	6.063
Nilsson_rare_SE	3.385	0.060	3.813
Samusik_01_SE	4.169	0.083	4.582
Samusik_all_SE	10.724	0.380	11.797