Stephanie Gogarten
| Snapshot Date: 2019-10-17 09:00:12 -0400 (Thu, 17 Oct 2019) |
| URL: https://git.bioconductor.org/packages/GWASdata |
| Branch: RELEASE_3_9 |
| Last Commit: d763d19 |
| Last Changed Date: 2019-05-02 11:56:24 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 experimental data |
This page was generated on 2019-10-17 16:51:24 -0400 (Thu, 17 Oct 2019).
| Package 149/371 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GWASdata 1.22.0 Stephanie Gogarten
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: GWASdata |
| Version: 1.22.0 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:GWASdata.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings GWASdata_1.22.0.tar.gz |
| StartedAt: 2019-10-17 13:17:01 -0400 (Thu, 17 Oct 2019) |
| EndedAt: 2019-10-17 13:17:38 -0400 (Thu, 17 Oct 2019) |
| EllapsedTime: 36.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: GWASdata.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:GWASdata.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings GWASdata_1.22.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-data-experiment/meat/GWASdata.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GWASdata/DESCRIPTION’ ... OK
* this is package ‘GWASdata’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_A03_31250.BIRDSEED.ALLELE_SUMMARY.TXT
GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_A03_31250.BIRDSEED.CHP.TXT
GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_A05_31282.BIRDSEED.ALLELE_SUMMARY.TXT
GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_A05_31282.BIRDSEED.CHP.TXT
GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_B02_31236.BIRDSEED.ALLELE_SUMMARY.TXT
GWASdata/inst/extdata/affy_raw_data/GIGAS_g_GAINmixHapMapAffy2_GenomeWideEx_6_B02_31236.BIRDSEED.CHP.TXT
Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GWASdata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 14.8Mb
sub-directories of 1Mb or more:
extdata 14.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.9-data-experiment/meat/GWASdata.Rcheck/00check.log’
for details.
GWASdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL GWASdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘GWASdata’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GWASdata)
GWASdata.Rcheck/GWASdata-Ex.timings
| name | user | system | elapsed | |
| GWASdata-package | 0.170 | 0.016 | 2.071 | |