Package: sevenbridges

Version: 1.13.5

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:sevenbridges.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings sevenbridges_1.13.5.tar.gz

StartedAt: 2019-04-09 03:42:38 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 03:46:18 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 220.1 seconds

RetCode: 0

Status:  OK

CheckDir: sevenbridges.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:sevenbridges.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings sevenbridges_1.13.5.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/sevenbridges.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sevenbridges/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sevenbridges’ version ‘1.13.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sevenbridges’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
Flow        71.116  0.343  72.122
Tool-class  17.586  0.052  17.771
link_what   12.205  0.024  12.389
link        10.603  0.017  10.725
convert_app  8.228  0.014   8.332
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL sevenbridges
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘sevenbridges’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (sevenbridges)

R Under development (unstable) (2018-11-27 r75683) -- "Unsuffered Consequences"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library("testthat")
> library("sevenbridges")
> test_check("sevenbridges")
══ testthat results  ═══════════════════════════════════════════════════════════
OK: 0 SKIPPED: 0 FAILED: 0
> 
> proc.time()
   user  system elapsed 
  3.267   0.234   3.516 

name	user	system	elapsed
App-class	0	0	0
Auth-class	0.012	0.001	0.013
Binding	0.074	0.001	0.074
CCBList	0.020	0.000	0.021
CWL	0.003	0.000	0.002
CommandInputParameter-class	0.035	0.001	0.036
CommandInputSchema-class	0.028	0.000	0.028
CommandLineBinding-class	0.009	0.000	0.009
CommandLineTool	0.03	0.00	0.03
CommandOutputBinding-class	0.013	0.001	0.012
CommandOutputParameter-class	0.02	0.00	0.02
CommandOutputSchema-class	0.022	0.000	0.022
DSCList	0.022	0.000	0.022
Enum	0.032	0.001	0.032
Expression-class	0.012	0.000	0.012
ExpressionTool-class	0.031	0.000	0.031
File-class	0.084	0.001	0.087
Files-class	0.008	0.000	0.008
Flow	71.116	0.343	72.122
Metadata	0.099	0.001	0.101
Parameter	0.048	0.000	0.048
Process	0.063	0.001	0.065
ProcessRequirement	0.058	0.001	0.060
Schema	0.023	0.000	0.022
TaskHook	0.002	0.000	0.003
Tool-class	17.586	0.052	17.771
Workflow	0.038	0.001	0.040
WorkflowStep	0.004	0.000	0.005
addIdNum	0	0	0
api	0	0	0
as-methods	0.097	0.001	0.100
batch	0.001	0.000	0.001
cli_list_projects	0.001	0.000	0.001
cli_list_tags	0.000	0.000	0.001
cli_upload	0.000	0.000	0.001
convert_app	8.228	0.014	8.332
cwl-utils	0.146	0.002	0.150
delete-methods	0.001	0.001	0.001
download-methods	0.000	0.000	0.001
get_token	0	0	0
get_uploader	0.000	0.001	0.001
input_output_matrix	0.170	0.003	0.173
link	10.603	0.017	10.725
link_what	12.205	0.024	12.389
project_details	0	0	0
project_members	0.001	0.000	0.001
requirements	0.080	0.001	0.080
response-methods	0.000	0.000	0.001
sbg_get_env	0	0	0
sbg_set_env	0.001	0.000	0.001
set_test_env	0.001	0.000	0.000
shorthand-cwl	0.039	0.001	0.040
tag-methods	0	0	0
test_tool_bunny	0.000	0.000	0.001
test_tool_cwlrun	0.001	0.000	0.000
test_tool_rabix	0.001	0.001	0.001
upload_complete_all	0	0	0
upload_complete_part	0.000	0.000	0.001
upload_delete	0	0	0
upload_info	0	0	0
upload_info_part	0	0	0
upload_init	0.001	0.000	0.000