Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:07:24 -0400 (Wed, 16 Oct 2019).
Package 1039/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
motifbreakR 1.14.0 Simon Gert Coetzee
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ WARNINGS ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: motifbreakR |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:motifbreakR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings motifbreakR_1.14.0.tar.gz |
StartedAt: 2019-10-16 03:19:18 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 03:28:38 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 559.2 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: motifbreakR.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:motifbreakR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings motifbreakR_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/motifbreakR.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘motifbreakR/DESCRIPTION’ ... OK * this is package ‘motifbreakR’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘motifbreakR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'MotifDb' 'grid' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotMotifLogoStack.2: no visible global function definition for 'par' Undefined global functions or variables: par Consider adding importFrom("graphics", "par") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: 'rs1006140' Undocumented data sets: 'rs1006140' All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed snps.from.rsid 116.096 3.08 123.764 motifbreakR 9.734 0.18 9.944 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/motifbreakR.Rcheck/00check.log’ for details.
motifbreakR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL motifbreakR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘motifbreakR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading See system.file("LICENSE", package="MotifDb") for use restrictions. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location See system.file("LICENSE", package="MotifDb") for use restrictions. ** testing if installed package can be loaded from final location See system.file("LICENSE", package="MotifDb") for use restrictions. ** testing if installed package keeps a record of temporary installation path * DONE (motifbreakR)
motifbreakR.Rcheck/motifbreakR-Ex.timings
name | user | system | elapsed | |
calculatePvalue | 0.319 | 0.004 | 0.322 | |
encodemotif | 0.039 | 0.004 | 0.044 | |
example.results | 0.139 | 0.004 | 0.143 | |
factorbook | 0.005 | 0.004 | 0.009 | |
hocomoco | 0.014 | 0.000 | 0.014 | |
homer | 0.007 | 0.004 | 0.011 | |
motifbreakR | 9.734 | 0.180 | 9.944 | |
motifbreakR_motif | 0.047 | 0.000 | 0.046 | |
plotMB | 0.075 | 0.004 | 0.079 | |
snps.from.file | 0.884 | 0.004 | 1.062 | |
snps.from.rsid | 116.096 | 3.080 | 123.764 | |