Package: imageHTS

Version: 1.34.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:imageHTS.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings imageHTS_1.34.0.tar.gz

StartedAt: 2019-10-16 02:29:03 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 02:32:16 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 193.0 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:imageHTS.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings imageHTS_1.34.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/imageHTS.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* this is package ‘imageHTS’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘imageHTS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
extractFeatures 12.658  0.036  12.703
countObjects     5.922  0.143   6.149
segmentWells     5.648  0.014   5.664
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.9-bioc/meat/imageHTS.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL imageHTS
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘imageHTS’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	5.922	0.143	6.149
extractFeatures	12.658	0.036	12.703
fileHTS	1.825	0.001	3.242
getImageConf	1.407	0.004	1.411
getUnames	2.709	0.000	2.709
getWellFeatures	3.349	0.000	3.382
highlightSegmentation	0	0	0
installCellPicker	2.173	0.003	2.291
makeCellHTS	0	0	0
parseDCF	0.002	0.000	0.003
parseImageConf	1.505	0.004	1.509
popCellPicker	1.452	0.000	1.452
prw2uname	0.004	0.000	0.004
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	5.648	0.014	5.664
segmentYeastBF	2.591	0.008	2.611
summarizeWells	0.000	0.000	0.001
zprime	3.467	0.000	3.477