Xiuwen Zheng
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/SNPRelate |
| Branch: RELEASE_3_9 |
| Last Commit: 81c581b |
| Last Changed Date: 2019-07-03 14:00:19 -0400 (Wed, 03 Jul 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:53:54 -0400 (Wed, 16 Oct 2019).
| Package 1552/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SNPRelate 1.18.1 Xiuwen Zheng
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: SNPRelate |
| Version: 1.18.1 |
| Command: rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SNPRelate_1.18.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SNPRelate.buildbin-libdir |
| StartedAt: 2019-10-16 09:27:36 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 09:28:29 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 53.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: SNPRelate_1.18.1.tgz |
| PackageFileSize: 3.665 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SNPRelate_1.18.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SNPRelate.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SNPRelate.buildbin-libdir SNPRelate_1.18.1.tar.gz' >>>>>>> * installing *source* package ‘SNPRelate’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ConvToGDS.cpp -o ConvToGDS.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c R_SNPRelate.c -o R_SNPRelate.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c SNPRelate.cpp -o SNPRelate.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ThreadPool.cpp -o ThreadPool.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dGenGWAS.cpp -o dGenGWAS.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dVect.cpp -o dVect.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genBeta.cpp -o genBeta.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genEIGMIX.cpp -o genEIGMIX.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genFst.cpp -o genFst.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genHWE.cpp -o genHWE.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genIBD.cpp -o genIBD.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genIBS.cpp -o genIBS.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genKING.cpp -o genKING.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genLD.cpp -o genLD.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genPCA.cpp -o genPCA.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/gdsfmt/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c genSlideWin.cpp -o genSlideWin.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/SNPRelate.buildbin-libdir/00LOCK-SNPRelate/00new/SNPRelate/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SNPRelate) >>>>>>> >>>>>>> FIXING LINKS FOR SNPRelate.buildbin-libdir/SNPRelate/libs//SNPRelate.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs//SNPRelate.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs//SNPRelate.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs//SNPRelate.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs//SNPRelate.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs//SNPRelate.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs//SNPRelate.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs//SNPRelate.so"