Per Broberg,
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/SAGx |
| Branch: RELEASE_3_9 |
| Last Commit: 502f459 |
| Last Changed Date: 2019-05-02 11:53:06 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:46:10 -0400 (Wed, 16 Oct 2019).
| Package 1448/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SAGx 1.58.0 Per Broberg,
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: SAGx |
| Version: 1.58.0 |
| Command: rm -rf SAGx.buildbin-libdir && mkdir SAGx.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SAGx_1.58.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SAGx.buildbin-libdir |
| StartedAt: 2019-10-16 09:21:19 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 09:21:36 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 17.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: SAGx_1.58.0.tgz |
| PackageFileSize: 469.3 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SAGx.buildbin-libdir && mkdir SAGx.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SAGx_1.58.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SAGx.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SAGx.buildbin-libdir SAGx_1.58.0.tar.gz' >>>>>>> * installing *source* package ‘SAGx’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c minigsea.c -o minigsea.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c newboot.c -o newboot.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c samrocNboot.c -o samrocNboot.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SAGx.so minigsea.o newboot.o samrocNboot.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/SAGx.buildbin-libdir/00LOCK-SAGx/00new/SAGx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SAGx) >>>>>>> >>>>>>> FIXING LINKS FOR SAGx.buildbin-libdir/SAGx/libs//SAGx.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "SAGx.buildbin-libdir/SAGx/libs//SAGx.so"