Bioconductor Package Maintainer
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/Rhtslib |
| Branch: RELEASE_3_9 |
| Last Commit: 3ed0b5d |
| Last Changed Date: 2019-09-27 00:55:03 -0400 (Fri, 27 Sep 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:55:04 -0400 (Wed, 16 Oct 2019).
| Package 1375/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Rhtslib 1.16.3 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ WARNINGS ] | OK | |
| Package: Rhtslib |
| Version: 1.16.3 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Rhtslib.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Rhtslib_1.16.3.tar.gz |
| StartedAt: 2019-10-16 06:15:17 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 06:15:45 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 28.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: Rhtslib.Rcheck |
| Warnings: 3 |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:Rhtslib.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings Rhtslib_1.16.3.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/Rhtslib.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rhtslib/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rhtslib’ version ‘1.16.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
src/htslib-1.7/.appveyor.yml
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rhtslib’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.9-bioc/meat/Rhtslib.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
installed size is 7.6Mb
sub-directories of 1Mb or more:
testdata 4.2Mb
usrlib 2.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ...Error: package or namespace load failed for ‘Rhtslib’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so, 6): Symbol not found: _lzma_easy_buffer_encode
Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so
Expected in: flat namespace
in /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so
Execution halted
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* checking whether the package can be unloaded cleanly ... WARNING
Error: package or namespace load failed for ‘Rhtslib’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so, 6): Symbol not found: _lzma_easy_buffer_encode
Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so
Expected in: flat namespace
in /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so
Execution halted
* checking whether the namespace can be loaded with stated dependencies ... WARNING
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so, 6): Symbol not found: _lzma_easy_buffer_encode
Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so
Expected in: flat namespace
in /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so
Calls: ... eval -> eval -> loadNamespace -> library.dynam -> dyn.load
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Error: package or namespace load failed for ‘Rhtslib’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so, 6): Symbol not found: _lzma_easy_buffer_encode
Referenced from: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so
Expected in: flat namespace
in /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so
Call sequence:
6: stop(msg, call. = FALSE, domain = NA)
5: value[[3L]](cond)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
3: tryCatchList(expr, classes, parentenv, handlers)
2: tryCatch({
attr(package, "LibPath") <- which.lib.loc
ns <- loadNamespace(package, lib.loc)
env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)
}, error = function(e) {
P <- i
Execution halted
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
src/Makevars
src/htslib-1.7/Makefile
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif, .NOTPARALLEL See section ‘Writing portable
packages’ in the ‘Writing R Extensions’ manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs/Rhtslib.so’:
Found ‘___assert_rtn’, possibly from ‘assert’ (C)
Found ‘___stderrp’, possibly from ‘stderr’ (C)
Found ‘___stdoutp’, possibly from ‘stdout’ (C)
Found ‘_abort’, possibly from ‘abort’ (C)
Found ‘_exit’, possibly from ‘exit’ (C)
Found ‘_printf’, possibly from ‘printf’ (C)
Found ‘_putchar’, possibly from ‘putchar’ (C)
Found ‘_puts’, possibly from ‘printf’ (C), ‘puts’ (C)
Found ‘_srand48’, possibly from ‘srand48’ (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 5 NOTEs
See
‘/Users/biocbuild/bbs-3.9-bioc/meat/Rhtslib.Rcheck/00check.log’
for details.
Rhtslib.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Rhtslib ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘Rhtslib’ ... ** using non-staged installation via StagedInstall field ** libs cd "htslib-1.7" && make -f "/Library/Frameworks/R.framework/Resources/etc/Makeconf" -f "Makefile.Rhtslib" Makefile.Rhtslib:128: warning: overriding commands for target `.c.o' /Library/Frameworks/R.framework/Resources/etc/Makeconf:167: warning: ignoring old commands for target `.c.o' echo '/* Default config.h generated by Makefile */' > config.h echo '#define HAVE_LIBBZ2 1' >> config.h echo '#define HAVE_LIBLZMA 1' >> config.h echo '#define HAVE_LZMA_H 1' >> config.h echo '#define HAVE_FSEEKO 1' >> config.h echo '#define HAVE_DRAND48 1' >> config.h clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o knetfile.o knetfile.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.7"' > version.h clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.o sam.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.o synced_bcf_reader.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.o vcf_sweep.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.o tbx.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.o textutils.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.o thread_pool.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.o vcf.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.o vcfutils.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.o cram/cram_codecs.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.o cram/cram_decode.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.o cram/cram_encode.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.o cram/cram_external.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.o cram/cram_index.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.o cram/cram_io.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_samtools.o cram/cram_samtools.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.o cram/cram_stats.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/files.o cram/files.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.o cram/mFILE.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.o cram/open_trace_file.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.o cram/pooled_alloc.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/rANS_static.o cram/rANS_static.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/sam_header.o cram/sam_header.c clang -Wall -g -O2 -fpic -I. -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.o cram/string_alloc.c ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o ranlib libhts.a clang -dynamiclib -install_name /usr/local/lib/libhts.2.dylib -current_version 1.7 -compatibility_version 2 -L/usr/local/lib -o libhts.dylib kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o -lz -lm -lbz2 -llzma ln -sf libhts.dylib libhts.2.dylib mkdir -p "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/include/htslib" cd "htslib-1.7/htslib" && cp * "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/include/htslib" && cd .. && cp textutils_internal.h hts_internal.h "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/include" clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/zlibbioc/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_Rhtslib.c -o R_init_Rhtslib.o mkdir -p "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/usrlib" cd "htslib-1.7" && cp libhts.a "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/usrlib" clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Rhtslib.so R_init_Rhtslib.o /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/usrlib/libhts.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation mkdir -p "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/testdata/tabix" cd "htslib-1.7/test" && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/testdata" 2>/dev/null || true) && cd tabix && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/testdata/tabix" 2>/dev/null || true) installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rhtslib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rhtslib)
Rhtslib.Rcheck/Rhtslib-Ex.timings
| name | user | system | elapsed | |
| Rhtslib-package | 0.027 | 0.002 | 0.027 | |
| pkgconfig | 0.003 | 0.002 | 0.007 | |