Package: RNASeqR

Version: 0.99.23

Command: chmod a+r RNASeqR -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RNASeqR

StartedAt: 2018-10-22 07:28:42 -0400 (Mon, 22 Oct 2018)

EndedAt: 2018-10-22 07:29:49 -0400 (Mon, 22 Oct 2018)

EllapsedTime: 66.6 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   chmod a+r RNASeqR -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RNASeqR
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* checking for file 'RNASeqR/DESCRIPTION' ... OK
* preparing 'RNASeqR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "RNASeqR_files/figure-html/unnamed-chunk-1-1.png" -trim "RNASeqR_files/figure-html/unnamed-chunk-1-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "RNASeqR_files/figure-html/unnamed-chunk-2-1.png" -trim "RNASeqR_files/figure-html/unnamed-chunk-2-1.png"' execution failed with error code 4
Loading required package: ggplot2
Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang
Registered S3 method overwritten by 'dplyr':
  method               from  
  as.data.frame.tbl_df tibble
Loading required package: pathview
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans,
    rowSums, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows


##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
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Loading required package: edgeR
Loading required package: limma

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA



Registered S3 method overwritten by 'xts':
  method     from
  as.zoo.xts zoo 
Registered S3 method overwritten by 'enrichplot':
  method               from
  fortify.enrichResult DOSE
Welcome to RNASeqR
************** Checking input parameters ************

(<U+2714>) : Input parameters are all not NA !! 


************** Checking operating system type ************

(<U+2718>) : Your system operating system is windows

       This program supports only 'linux' and 'osx'


Quitting from lines 190-197 (RNASeqR.Rmd) 
Error: processing vignette 'RNASeqR.Rmd' failed with diagnostics:
Operating system ERROR
Execution halted