Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:09:45 -0400 (Wed, 16 Oct 2019).
Package 855/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
KEGGlincs 1.10.0 Shana White
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: KEGGlincs |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:KEGGlincs.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings KEGGlincs_1.10.0.tar.gz |
StartedAt: 2019-10-16 02:41:18 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 02:44:31 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 193.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: KEGGlincs.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:KEGGlincs.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings KEGGlincs_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/KEGGlincs.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘KEGGlincs/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘KEGGlincs’ version ‘1.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘KEGGlincs’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘XML’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed overlap_info 19.439 0.652 20.440 add_edge_data 19.369 0.491 21.620 edge_mapping_info 10.512 0.276 11.022 path_genes_by_cell_type 9.354 0.124 9.721 refine_mappings 9.093 0.240 9.652 get_graph_object 7.357 0.028 7.625 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.9-bioc/meat/KEGGlincs.Rcheck/00check.log’ for details.
KEGGlincs.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL KEGGlincs ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘KEGGlincs’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGlincs)
KEGGlincs.Rcheck/KEGGlincs-Ex.timings
name | user | system | elapsed | |
KEGG_lincs | 0 | 0 | 0 | |
KL_compare | 0 | 0 | 0 | |
add_edge_data | 19.369 | 0.491 | 21.620 | |
cyto_vis | 0.398 | 0.000 | 0.636 | |
edge_mapping_info | 10.512 | 0.276 | 11.022 | |
expand_KEGG_edges | 0.393 | 0.020 | 0.643 | |
expand_KEGG_mappings | 0.187 | 0.000 | 0.417 | |
generate_mappings | 0.001 | 0.000 | 0.001 | |
get_KGML | 0.220 | 0.000 | 0.904 | |
get_fisher_info | 0.002 | 0.000 | 0.003 | |
get_graph_object | 7.357 | 0.028 | 7.625 | |
keggerize_edges | 0.000 | 0.000 | 0.001 | |
node_mapping_info | 0.154 | 0.000 | 0.392 | |
overlap_info | 19.439 | 0.652 | 20.440 | |
path_genes_by_cell_type | 9.354 | 0.124 | 9.721 | |
refine_mappings | 9.093 | 0.240 | 9.652 | |
tidy_edge | 0.001 | 0.000 | 0.001 | |