Package: EDDA

Version: 1.22.0

Command: rm -rf EDDA.buildbin-libdir && mkdir EDDA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EDDA_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R EDDA.buildbin-libdir

StartedAt: 2019-10-16 08:31:46 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 08:32:29 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 42.8 seconds

RetCode: 0

Status:  OK

PackageFile: EDDA_1.22.0.tgz

PackageFileSize: 2.072 MiB

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### Running command:
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###   rm -rf EDDA.buildbin-libdir && mkdir EDDA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EDDA_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R EDDA.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=EDDA.buildbin-libdir EDDA_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package ‘EDDA’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c cuffdiff.cpp -o cuffdiff.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o EDDA.so cuffdiff.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/EDDA.buildbin-libdir/00LOCK-EDDA/00new/EDDA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘baySeq’ for request: ‘rbind’ when loading ‘EDDA’
Note: possible error in 'exactTestByDeviance(y1, ': unused argument (big.count = big.count) 
Note: possible error in 'exactTestBySmallP(y1, ': unused argument (big.count = big.count) 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘baySeq’ for request: ‘rbind’ when loading ‘EDDA’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘baySeq’ for request: ‘rbind’ when loading ‘EDDA’
** testing if installed package keeps a record of temporary installation path
* DONE (EDDA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR EDDA.buildbin-libdir/EDDA/libs//EDDA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"