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INSTALL report for scde on tokay2

This page was generated on 2019-10-16 12:34:27 -0400 (Wed, 16 Oct 2019).

Package 1464/1741HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scde 2.12.0
Jean Fan
Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019)
URL: https://git.bioconductor.org/packages/scde
Branch: RELEASE_3_9
Last Commit: ec52dd0
Last Changed Date: 2019-05-02 11:53:58 -0400 (Thu, 02 May 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: scde
Version: 2.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/scde_2.12.0.tar.gz && rm -rf scde.buildbin-libdir && mkdir scde.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scde.buildbin-libdir scde_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL scde_2.12.0.zip && rm scde_2.12.0.tar.gz scde_2.12.0.zip
StartedAt: 2019-10-15 21:09:32 -0400 (Tue, 15 Oct 2019)
EndedAt: 2019-10-15 21:11:41 -0400 (Tue, 15 Oct 2019)
EllapsedTime: 129.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/scde_2.12.0.tar.gz && rm -rf scde.buildbin-libdir && mkdir scde.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scde.buildbin-libdir scde_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL scde_2.12.0.zip && rm scde_2.12.0.tar.gz scde_2.12.0.zip
###
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install for i386

* installing *source* package 'scde' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c bwpca.cpp -o bwpca.o
bwpca.cpp: In function 'void set_random_matrix(arma::mat&, arma::mat&)':
bwpca.cpp:23:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int j=0;j