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This page was generated on 2019-10-16 12:39:45 -0400 (Wed, 16 Oct 2019).
| Package 1372/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| rhdf5client 1.6.1 Samuela Pollack
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK |
| Package: rhdf5client |
| Version: 1.6.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/rhdf5client_1.6.1.tar.gz && rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5client.buildbin-libdir rhdf5client_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL rhdf5client_1.6.1.zip && rm rhdf5client_1.6.1.tar.gz rhdf5client_1.6.1.zip |
| StartedAt: 2019-10-15 19:40:57 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:42:12 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 74.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/rhdf5client_1.6.1.tar.gz && rm -rf rhdf5client.buildbin-libdir && mkdir rhdf5client.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5client.buildbin-libdir rhdf5client_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL rhdf5client_1.6.1.zip && rm rhdf5client_1.6.1.tar.gz rhdf5client_1.6.1.zip
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install for i386
* installing *source* package 'rhdf5client' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c extract.c -o extract.o
extract.c: In function 'extractBin':
extract.c:101:42: warning: 'rdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
^
extract.c:101:52: warning: 'rip' may be used uninitialized in this function [-Wmaybe-uninitialized]
A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rhdf5client.buildbin-libdir/00LOCK-rhdf5client/00new/rhdf5client/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rhdf5client'
finding HTML links ... done
H5S_Array-class html
H5S_Array html
H5S_ArraySeed-class html
H5S_Matrix-class html
H5S_dataset html
H5S_dataset2 html
H5S_source-class html
HSDSArray html
HSDSArraySeed html
HSDSDataset-class html
HSDSDataset html
HSDSFile-class html
HSDSFile html
HSDSMatrix html
HSDSSource-class html
HSDSSource html
HSDS_Matrix html
HSDS_Matrix_OLD html
URL_h5serv html
URL_hsds html
as html
dataset html
dim-H5S_ArraySeed-method html
dim html
dimnames-H5S_ArraySeed-method html
dimnames html
domains html
dsmeta html
extract_array html
fetchDatasets html
getData-methods html
getDatasetAttrs html
getDatasetSlice html
getDatasetUUIDs html
getDims html
getHRDF html
getReq html
groups-methods html
hsdsInfo html
internalDim html
links html
listDatasets html
listDomains-methods html
rhdf5client-deprecated html
rhdf5client html
setPath html
sproc html
sub-H5S_dataset-character-character-ANY-method
html
sub-H5S_dataset-numeric-numeric-ANY-method
html
sub-HSDSDataset-numeric-ANY-ANY-method
html
sub-HSDSDataset-numeric-numeric-ANY-method
html
sub-sub html
targets html
transfermode html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rhdf5client' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c extract.c -o extract.o
extract.c: In function 'extractBin':
extract.c:101:42: warning: 'rdp' may be used uninitialized in this function [-Wmaybe-uninitialized]
A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
^
extract.c:101:52: warning: 'rip' may be used uninitialized in this function [-Wmaybe-uninitialized]
A[ia] = (Rf_isReal(resvec_sexp) ? rdp[ib] : rip[ib]);
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o rhdf5client.dll tmp.def extract.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/rhdf5client.buildbin-libdir/rhdf5client/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rhdf5client' as rhdf5client_1.6.1.zip
* DONE (rhdf5client)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'rhdf5client' successfully unpacked and MD5 sums checked