Florian Hahne
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/prada |
| Branch: RELEASE_3_9 |
| Last Commit: 5b534be |
| Last Changed Date: 2019-05-02 11:53:02 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:19:20 -0400 (Wed, 16 Oct 2019).
| Package 1240/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| prada 1.60.0 Florian Hahne
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: prada |
| Version: 1.60.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/prada_1.60.0.tar.gz && rm -rf prada.buildbin-libdir && mkdir prada.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=prada.buildbin-libdir prada_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL prada_1.60.0.zip && rm prada_1.60.0.tar.gz prada_1.60.0.zip |
| StartedAt: 2019-10-15 19:18:42 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 19:19:56 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 73.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/prada_1.60.0.tar.gz && rm -rf prada.buildbin-libdir && mkdir prada.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=prada.buildbin-libdir prada_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL prada_1.60.0.zip && rm prada_1.60.0.tar.gz prada_1.60.0.zip
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install for i386
* installing *source* package 'prada' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c inPolygon.c -o inPolygon.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o prada.dll tmp.def inPolygon.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/prada.buildbin-libdir/00LOCK-prada/00new/prada/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'prada'
finding HTML links ... done
analysePlate html
as.all html
barploterrbar html
combineFrames html
csApply html
cytoFrame-class html
cytoSet-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpULTs7g/R.INSTALL14383bc64c95/prada/man/cytoSet-class.Rd:88: file link 'phenoData-class' in package 'Biobase' does not exist and so has been treated as a topic
data-cytoFrame html
data-cytoSet html
devDims html
devRes html
fitNorm2 html
gate-class html
gateSet-class html
getAlphaNumeric html
getPradaPar html
new-internal html
plotNorm2 html
plotPlate html
readCytoSet html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpULTs7g/R.INSTALL14383bc64c95/prada/man/readCytoSet.Rd:11: file link 'dir' in package 'base' does not exist and so has been treated as a topic
readFCS html
readFCSaux html
removeCensored html
tcltkProgress html
threePanelPlot html
thresholds html
touchFCS html
vpLocation html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'prada' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c inPolygon.c -o inPolygon.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o prada.dll tmp.def inPolygon.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/prada.buildbin-libdir/prada/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'prada' as prada_1.60.0.zip
* DONE (prada)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'prada' successfully unpacked and MD5 sums checked