Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:30:05 -0400 (Wed, 16 Oct 2019).
Package 1035/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
monocle 2.12.0 Cole Trapnell
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: monocle |
Version: 2.12.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/monocle_2.12.0.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL monocle_2.12.0.zip && rm monocle_2.12.0.tar.gz monocle_2.12.0.zip |
StartedAt: 2019-10-15 19:56:40 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 19:59:02 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 141.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/monocle_2.12.0.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL monocle_2.12.0.zip && rm monocle_2.12.0.tar.gz monocle_2.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 9407k 100 9407k 0 0 49.7M 0 --:--:-- --:--:-- --:--:-- 51.6M install for i386 * installing *source* package 'monocle' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c clustering.cpp -o clustering.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/monocle.buildbin-libdir/00LOCK-monocle/00new/monocle/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'monocle' finding HTML links ... done BEAM html CellDataSet-methods html CellDataSet html CellType html CellTypeHierarchy html addCellType html branchTest html buildBranchCellDataSet html calABCs html calILRs html calibrate_per_cell_total_proposal html cellPairwiseDistances-set html cellPairwiseDistances html clusterCells html finding level-2 HTML links ... done clusterGenes html compareModels html detectBifurcationPoint html detectGenes html diff_test_helper html differentialGeneTest html dispersionTable html estimateDispersionsForCellDataSet html estimateSizeFactorsForMatrix html estimate_t html exportCDS html extract_good_branched_ordering html fitModel html fit_model_helper html genSmoothCurveResiduals html genSmoothCurves html get_classic_muscle_markers html importCDS html load_HSMM html load_HSMM_markers html load_lung html markerDiffTable html mcesApply html minSpanningTree-set html minSpanningTree html newCellDataSet html newCellTypeHierarchy html orderCells html order_p_node html package-deprecated html plot_cell_clusters html plot_cell_trajectory html plot_clusters html plot_coexpression_matrix html plot_complex_cell_trajectory html plot_genes_branched_heatmap html plot_genes_branched_pseudotime html plot_genes_in_pseudotime html plot_genes_jitter html plot_genes_positive_cells html plot_genes_violin html plot_multiple_branches_heatmap html plot_multiple_branches_pseudotime html plot_ordering_genes html plot_pc_variance_explained html plot_pseudotime_heatmap html plot_rho_delta html pq_helper html reduceDimension html reducedDimA-set html reducedDimA html reducedDimK-set html reducedDimK html reducedDimS-set html reducedDimS html reducedDimW-set html reducedDimW html relative2abs html residualMatrix html responseMatrix html selectTopMarkers html setOrderingFilter html spike_df html vstExprs html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'monocle' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c clustering.cpp -o clustering.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/monocle.buildbin-libdir/monocle/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'monocle' as monocle_2.12.0.zip * DONE (monocle) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'monocle' successfully unpacked and MD5 sums checked